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Agentic AI Engineer

ID: 9183

Type: Full-time

Category: Others

Company Name: Apheris

Location: Europe

Education Level: Mid-level (2-5 years)

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Job Description

About Apheris

At Apheris, we are building the future of how AI is applied in pharmaceutical R&D.

We enable leading pharmaceutical teams to discover and develop drugs faster. We host the industry’s largest federated data networks for drug discovery AI, spanning co-folding, ADMET, and antibody developability.

Across these networks, models are trained on proprietary industry datasets to achieve higher performance and broader applicability while keeping data control and IP protected. We deliver these superior models through drug discovery applications that enable teams to run them at scale, further customize them, and integrate them into existing R&D workflows.
  • AI Structural Biology (AISB) Network: Nine top-20 pharma companies collaborate in the field of co-folding, structure-based binding affinity predictions and antibody design.
  • ADMET Network: Five top-50 pharma and biotechs collaborate to improve small-molecule property prediction and expand to further drug modalities.
  • Antibody Developability Network: Pharma partners collaborate to federate historical and purpose-built antibody developability datasets for secure ML training, without data leaving each partner’s environment.

About the role

We are hiring an Agentic AI Engineer to help transform Apheris into an AI-first company, enhancing business workflows by leveraging agents.

This role is focused on building Apheris’ internal AI-first data foundation and deploying agentic workflows that materially improve how teams access information, make decisions, and execute. You will connect fragmented internal and external data sources and turn them into usable systems, enabling LLM-powered querying, automation, and decision support across the organization.

Your initial focus will be on commercial and cross-functional enablement, building systems that integrate meeting transcripts, email, Slack, CRM context, product documentation, and relevant external signals. On top of this foundation, you will design and deploy agentic workflows that are used securely in daily operations, not just prototypes.

This is a hands-on builder role with a high bar for output quality, speed, and ownership. The emphasis is on identifying high-leverage opportunities, shipping quickly, and turning working prototypes into reliable internal systems that create sustained impact. You will largely work with business stakeholders and have great visibility with leadership.

What you will do

  • Build Apheris’ AI-first internal data foundation
    • Create a unified data layer across:
      • Meeting transcripts
      • Email and Slack communication
      • CRM and account context
      • Confluence
      • Product documentation
      • Selected external signals
    • Design pragmatic data pipelines, schemas, and retrieval systems optimized for LLM access
    • Ensure information is structured, queryable, and reliable for downstream workflows
  • Build agentic workflows and internal AI systems
    • Design and deploy agentic workflows and LLM interfaces used daily by teams
    • Deliver concrete, high-impact use cases such as:
      • Pre-meeting briefings with account context and recommended actions
      • Automated debriefs and follow-ups
      • Extraction of customer feedback into structured product insights
      • Cross-functional visibility into discussions and decisions
      • Translation of customer signals into product inputs
      • Competitive intelligence and internal knowledge synthesis
      • High-quality draft generation for internal and external communication
      • Marketing copy
      • Decision dashboards for senior leadership
    • Continuously iterate based on real usage and feedback
  • Drive adoption and workflow transformation
    • Identify high-value workflows across commercial, product, and leadership teams
    • Replace manual, fragmented processes with AI-native workflows
    • Shape how teams use AI in day-to-day work through tooling, interfaces, and patterns
    • Focus on systems that are actually used, not just technically impressive
  • Turn prototypes into production-ready systems
    • Move fast from prototype to reliable internal tooling
    • Establish lightweight standards for:
      • Data quality and consistency
      • Access control and permissions
      • Monitoring and maintenance
    • Balance speed with robustness to ensure sustained usage
  • Build secure, reliable, and non-destructive agent systems
    • Enforce process isolation and strict permissioning to prevent unintended or destructive actions
    • Ensure predictable, auditable behavior through clear execution boundaries, logging, and reproducibility
    • Implement fail-safes, rollback mechanisms, and continuous testing to harden systems against errors and unsafe behavior
  • Contribute to company-wide AI-first transformation
    • Act as a key driver in making Apheris an AI-native organization
    • Bring in best practices from agentic AI, LLM tooling, and workflow automation
    • Selectively contribute to adjacent technical systems where relevant

What we expect from you

  • 2–4 years of experience in applied AI, data systems, or building internal agentic tools in high-performance environments
  • Strong hands-on experience with:
    • LLMs and retrieval-augmented systems
    • Agent frameworks and orchestration
    • Workflow automation across multiple systems
    • Setting up secure execution environments (e.g., automated spawning of isolated, security-hardened runtimes for non-destructive agent operations)
  • Solid data engineering capabilities, including:
    • Designing and maintaining data pipelines (batch and real-time)
    • Building and managing structured data layers (e.g., event stores, data warehouses, vector databases)
    • Integrating and normalizing data across heterogeneous sources (CRM, Slack, email, docs, product systems)
    • Ensuring data quality, observability, and reliability for downstream AI systems
  • Exceptional execution bias and entrepreneurial drive
  • Experience building agentic workflows in real-world environments (not just experiments) – in particular, experience with integrating various data sources
  • Familiarity with tools such as Claude Code, Pi (OpenClaw), or similar agent systems
  • Experience integrating across communication tools, documentation systems, and internal platforms
  • Strong engineering and product judgment, plus a high bar for quality, speed, and ownership
  • Flexibility to jump across topics and work with various internal teams
  • Fluent English; German optional

Nice to have

  • Background in fast-moving startup environments with high expectations on output
  • Exposure to scientific, technical, or data-intensive domains

What we offer you

  • Industry-competitive compensation, including early-stage virtual share options
  • Remote-first working – work where you work best
  • Wellbeing budget, mental health support, work-from-home budget, co-working stipend, and learning budget
  • Generous holiday allowance
  • Office Days at our Berlin HQ or a different European location (3x per year)
  • A high-caliber, execution-focused team with experience from leading organizations
  • Significant ownership from day one and direct impact on how the company operates
  • The opportunity to shape how a fast-growing company becomes AI-first in practice
Company Information

Company Name: Apheris

Company Website: https://apheris.com

Company Address: Europe

Apheris is a technology company that develops and markets a privacy-preserving data collaboration and analytics platform designed to enable organizations to extract insight from sensitive and distributed data without exposing raw underlying data. The company’s offering is focused on allowing multiple parties — such as enterprises, research organizations, and service providers — to jointly run queries, analytics, and machine learning workflows over protected datasets while maintaining regulatory and contractual controls over data exposure. Apheris positions its platform as an alternative to traditional data-sharing models that require centralizing or copying sensitive records, emphasizing cryptographic, algorithmic, and engineering controls to minimize data movement and reduce privacy risk. Core business activities Apheris’s core activities center on product development, customer deployment, and professional services around privacy-preserving analytics. The company designs and engineers a software platform and associated developer tools that enable secure, policy-compliant collaboration across datasets that cannot be freely shared. Key business activities include: building and evolving the platform’s runtime and orchestration components; integrating privacy-preserving primitives (such as secure multi-party computation, homomorphic encryption techniques, differential privacy mechanisms, and federated learning approaches) into practical analytics workflows; providing APIs and SDKs for data engineers and data scientists; and delivering consulting and integration services to help enterprises deploy the technology in regulated environments. Main products and services Apheris offers a product suite that typically comprises a SaaS-hosted (cloud-managed) platform and deployable connectors and SDKs for customers’ environments. The principal product capabilities include: - Secure collaboration workspace: An environment where authorized collaborators can submit approved analytic queries and machine learning tasks against multiple data custodians’ datasets while preserving each custodian’s control and privacy constraints. The platform mediates how inputs and outputs are combined and enforces policies to prevent disclosure of raw records. - Privacy-preserving analytics engine: Runtime components that coordinate computations across data sources using cryptographic and algorithmic techniques to deliver aggregated results, model updates, or other permitted outputs without revealing underlying sensitive values. - Developer tools and APIs: SDKs and programmatic interfaces that enable data engineers and data scientists to instrument workflows, build collaborative models, and integrate the platform into existing data pipelines, BI tools, or ML toolchains. - Connectors and integration services: Prebuilt connectors to common data stores and cloud platforms, enabling custodians to link data in place without bulk extraction, plus professional services to assist with onboarding, schema mapping, and validation. - Governance, audit, and compliance features: Role-based access controls, policy management, audit logging, and output-checking mechanisms that help organizations demonstrate and enforce compliance with data protection regulations and contractual obligations. Technology and approach Apheris’s platform combines several technical approaches commonly used in modern privacy-preserving data collaboration solutions. These include federated computation patterns, which allow computations to occur where data resides; cryptographic protocols that enable joint computations without revealing plaintext values; and algorithmic privacy techniques (such as differential privacy) to limit the risk of re-identification from analytic outputs. The platform is designed to balance practical performance and scalability with strong privacy guarantees, enabling realistic analytics and model training at enterprise scale rather than purely research-oriented demonstrations. Implementation details are exposed via APIs and developer interfaces so teams can integrate privacy-preserving operations into analytics pipelines and ML workflows. Target customers and use cases Apheris targets organizations and consortia where sensitive data cannot be freely centralized but combining insights across datasets creates significant value. Common sectors include healthcare and life sciences (where patient-level data is highly regulated), financial services (where transaction and client confidentiality matter), advertising and marketing (for measurement and attribution without raw data exchange), and public sector or research collaborations that require strict privacy safeguards. Typical use cases include joint model training across multiple institutions, cross-organization analytics for fraud detection or risk scoring, privacy-preserving cohort analyses, and measurement/attribution computations that respect user privacy. Deployment and operational considerations The company’s offerings are generally delivered as a managed service or a hybrid model in which runtime components can be deployed within customer-controlled cloud accounts or on-premises environments to meet security and compliance needs. Integration work commonly includes mapping data schemas, establishing trust and access policies, and setting acceptable output controls. Apheris’s professional services or partner ecosystem typically assist customers with onboarding, configuring privacy parameters (for example, privacy budgets in differential privacy), and validating outputs to ensure utility and compliance. Benefits and limitations Apheris’s platform aims to enable value realization from sensitive datasets while minimizing regulatory and privacy risk by keeping raw data under the control of original custodians and by applying technical and policy controls to derived outputs. Benefits often cited by organizations adopting this type of solution include preserved data sovereignty, reduced need for data replication, improved ability to collaborate across institutional boundaries, and strengthened demonstrable compliance. At the same time, privacy-preserving computation introduces architectural and operational complexity and often requires careful engineering and trade-offs between privacy guarantees, analytic fidelity, and performance. Successful implementations typically involve coordination across legal, security, data engineering, and analytics teams. Partners and ecosystem Apheris’s ecosystem generally includes cloud infrastructure providers, data platform vendors, analytics and ML tool vendors, and consulting firms that provide integration and domain expertise. The platform is designed to interoperate with existing data stacks and BI/ML workflows to lower friction for adoption and to allow organizations to leverage privacy-preserving capabilities without wholesale replacement of existing tooling. Summary In summary, Apheris is a technology firm that delivers a privacy-first data collaboration and analytics platform enabling organizations to perform joint analytics and machine learning on sensitive, distributed datasets without exposing raw data. The company’s product mix focuses on runtime engines for secure computation, developer APIs, connectors, and governance features to support real-world deployments in regulated industries and multi-party collaborations. The solution aims to unlock analytic value while reducing the legal, contractual, and privacy risks associated with centralized data-sharing models.
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